The episodes of Shuffle! originally ran through July 7, 2005 to January 5, 2006 with a total of 24 episodes. Shuffle! Memories aired January 7, 2007 – March 25, 2007 with a number of 12 episodes.
The Man Who Could Become a God or a Demon!:
Rin is enjoying a rather normal life living with his childhood friend Kaede due to family deaths on both sides. One day at school, two new classmates transfer into his class: Lisianthus, heiress to the Realm of the Gods, and Nerine, heiress to the Realm of the Demons. Rin is told that he has been picked to marry either one, though it will be his choice as to whom.
|July 7, 2005|
I Wanted to See You!:
After a few days of adjusting to his new neighbors, Rin is starting to find it hard to cope with the recent changes in his life. Eventually, he starts to walk to and from school alone and one day while walking from school he meets a girl named Primula from the Realm of the Demons who is very attached to him, literally. When she comes home with him later, it is decided that she will live in Kaede's house from now on.
|July 14, 2005|
Do You Remember?
Summer is almost here, but first the students must go through their final exams. While everyone is studying, Sia gets some help from Rin, even though it's not much.
|July 21, 2005|
Egg Omelet of Happiness!
During the time when Rin and his classmates are cleaning their classroom, Nerine gets angry at a couple of guys insulting Rin and blows up the gym. Later, when a picnic is planned where everyone makes their own food to eat, Nerine must get help from Asa in order to learn how to cook.
|July 28, 2005|
Where I Belong:
With the ever-increasing presence of Nerine and Sia in Rin's life, Kaede is beginning to feel left out. When Kaede comes down with a cold, she tries to push herself so as not to be so much of a bother to Rin.
|August 4, 2005|
With Rin and Kaede going to school so often, Primula is starting to miss Rin so one day she comes to school unannounced, though eventually leaves with some coaxing by Rin. Later, it is decided that Primula needs some undergarments she is lacking and thus Rin and the rest of the girls go out to help Primula with this problem. During their outing, Rin buys Primula a new cat doll.
|August 11, 2005|
After a popular boy confesses to Asa, she's finding it hard to accept his feelings. After Asa gets injured during PE, Rin walks her home and they're able to grow closer together.
|August 18, 2005|
Inspired by a horoscope she read, Sia decides to take the initiative and asks Rin out on a date. However, following the date as she planned it out earlier proves difficult as people they know keep on showing up.
|August 25, 2005|
Survival Swimming at the Beach:
Now that summer's here, Rin and the girls have decided to go to the beach to have some fun. Everything goes smooth for a while, but when Rin and Sia are stranded offshore, what will they do?
|September 15, 2005|
After what happened at the beach, rumors start flying around that Rin and Sia are to be wed. As emotions start flaring up, will the rumors turn out to be true?
|September 22, 2005|
|11||Girls of Summer:During the summer break, Mayumi goes to eat at the restaurant Kareha works at, though forgets her wallet, so she must work off her debt for the day. During this time, Rin's teacher is finding it difficult to find a good man to be with.||September 29, 2005|
|12||Frozen Summer:With the summer almost at an end, everyone is still trying to finish their summer homework before the deadline. Later on, Primula falls ill and Rin learns of her terrible past.||October 6, 2005|
|13||House of Twilight:With Primula taken back to the Realm of the Demons, Rin and Kaede try to cope with their missing family member. Ultimately, Primula's condition comes out in the open and the one and only cure is revealed.||October 13, 2005|
|14||Lycoris:After Nerine ran to the nearby park, she tells Rin about the past she had with her clone Lycoris and how it all ties in with Primula. Later, after Asa collapsed at Kaede's house, Rin goes to see her at her own home where Asa tells him some of her own past.||October 20, 2005|
|15||What Was Regained:Rin, Kaede, Nerine and Sia have gone to the Demon Realm in order to see Primula again and try to help her in any way. Ultimately, things take a turn for the worse when she starts to lose control of the magic stored in her body. What can Rin do to save her?||October 27, 2005|
|16||Kikyō:While Rin is starting to spend more time with Asa, Sia is starting to feel that she's being left out. With nowhere else to turn, her other more assertive self surfaces and asks Rin out on a date.||November 3, 2005|
|17||Honest Feelings:After Sia's other self surfaces, Rin and she go out on a date, with Rin more or less as her captive. How will Rin get out of this awkward situation? Meanwhile, the girls at school start to worry about where he's gone missing.||November 10, 2005|
|18||The One Rin Loves:Rin goes out on a date at an amusement park targeted towards couples which is planned by Itsuki, Mayumi, Nerine and Sia so that Rin would voice how he feels towards Asa.||November 17, 2005|
|19||Unforgettable Sentiments:Rin starts spending most of his time with Asa and completely ignores Kaede. Kaede's past is shown and her yandere personality is revealed.||November 24, 2005|
|20||Indelible Sin:After Asa suffers another attack, Kaede starts to realize all that she's done in the past few days, but still cannot come to terms with where Rin's feelings truly lie. With almost nothing left, what will she do when told Rin may be leaving her house for good?||December 1, 2005|
|21||Where Feelings Go:Kaede has completely shut herself off from everyone, trying to think on what to do next. Before long, Primula finds that Kaede is gone and Primula runs to Rin to inform him. During her outing, she meets Asa and they have a talk about their feelings for Rin.||December 8, 2005|
|22||Towards a New Tomorrow:Rin has packed up all his things and has already found a cheap apartment to move into. On the day of the move, several of his friends come over and help him out.||December 15, 2005|
|23||The Truth Revealed:After Asa collapses once more, she's rushed to the hospital, though the doctors cannot do much to improve her condition. Asa's mother Ama reveals to Rin a deep dark secret about her past.||December 22, 2005|
|24||And...What Is Important:Asa escapes from the hospital and goes to the spot where Rin first confessed to her. Before long, Rin goes there to meet her, though there's still not much he can do. When all else has failed, Rin is prepared to do anything to save Asa.||January 5, 2006|
Shuffle! Memories (2007)Edit
This episode introduces the audience to the entire cast of characters and a little of the back story for the main characters. It's a basic overview of the Shuffle! story and universe.
|January 6, 2007|
Fuyou Kaede Chapter Part 1
Kaede's story is explained from when she and Rin were kids to when they are in high school.
|January 13, 2007|
Shigure Asa Chapter Part 1
Asa's story involving Rin is explained from how they first met to when Asa health starts deteriorating in high school. A bit of Asa's backstory with her mother Ama is touched upon as well.
|January 20, 2007|
Nerine Chapter Part 1
Nerine's story is explained during the time that she got to know Rin up to the point where it seems that Sia and Rin are about to be wed.
|January 27, 2007|
Lisianthus Chapter Part 1
Sia's story is explained from how she first met Rin as a child to the point where rumors start about them getting married soon.
|February 3, 2007|
Primula Chapter Part 1
Primula's story is explained from how she first met Rin in the arcade to the point where Rin gave her a new cat doll. The time when the Rin and his friends went to the beach is briefly explained as well.
|February 10, 2007|
Fuyou Kaede Chapter Part 2
The rest of Kaede's story is explained from the point where Rin started seeing more of Asa to after Rin decided to move out of Kaede's house.
|February 17, 2007|
Shigure Asa Chapter Part 2
The rest of Asa's story is explained from the point when Rin and she have their first date to when Asa finally used her magic to save Rin's life.
|February 24, 2007|
Nerine Chapter Part 2
The rest of Nerine's story is explained from the point when Primula was taken back to the demon world to when Nerine told him about Lycoris.
|March 3, 2007|
Lisianthus Chapter Part 2
The rest of Sia's story is explained from the point when Kikyō and Rin go on a date to when Sia finally confesses her love to Rin, but Rin already likes Asa at this point.
|March 10, 2007|
Primula Chapter Part 2
The rest of Primula's story is explained from the point when she returns to the human world healed to when Rin has already moved out of Kaede's house.
|March 17, 2007|
Rin and everyone take a trip on a ship in the God's Realm, but before long Rin and Nerine go missing. Fearing something has happened to them, Kaede, Asa, Sia, and Mayumi try to search for them.
|March 24, 2007|